Biology

Spiral-Fractal Evolution Theory

1. Basic Idea: Evolution = Flow of Motifs, Selection = Resonance Alignment Classical Evolution: Mutation + Selection + Drift + Migration Spiral–Fractal Evolution Theory: Motif Variation + Resonance Alignment + Fractal Propagation + Spiral Time Short Formula: Evolution = 𝑑𝑀 / 𝑑𝑡 ,Selection = ℛ(𝑀, 𝒞) 𝑀: spiral–fractal motif (genome + structure + behavior) 𝒞: […]

Spiral-Fractal Genetic Theory

Genome = Encoded Energy–Information Map of the Spiral–Fractal Motif 1. FUNDAMENTAL AXIOMS OF GENETICS A1 — The gene is the linear code of the spiral–fractal motif. The DNA sequence is not a “text,” but a 1-dimensional projection of the spiral–fractal motif. 𝐺 ≡ Π(𝑀) 𝑀: spiral–fractal motif Π: projection operator A2 — Genetic information is

Modeling Protein Folding with a Fractal Wave Function

Protein folding is one of biophysics’ most complex problems, and the classical approach describes this process as a minimization problem on a multidimensional free energy landscape. This study reformulates protein folding within the Fractal Mechanics (FM) framework, modeling the folding process as a spiral–hierarchical collapse of a fractal wave function. The proposed model defines a local spiral wave number (k-local) for each amino acid and a hierarchical resonance parameter (q) for each structural scale, suggesting that folding is driven not only by energy but also by resonance and fractal continuity. Comparative analysis with the classical funnel model shows that FM offers novel advantages, particularly in explaining rapid folding, misfolding, and aggregation phenomena.

Application of Elementary Circuit Topology to Biochemical Molecule Design

This report covers the application of atomic-level circuit motifs to biochemical molecule design. Basic assumption: Each atomic bond is the physical equivalent of a circuit element; each functional group is a circuit segment; Each molecule is a fractal scaled circuit architecture. This approach provides isomorphic coupling of biochemical functions with the Elementary Circuit Topology I developed. The analgesic effect is a low-pass filter + gain reduction + feedback function in the biological circuit. Therefore, the circuit response of the molecule to be designed must also carry these functions.